Sample identity
- Trajectory ID
- RDB000039__1F8V_1_A
- Source structure
- 1F8V_1_R
- Length
- 25 nt
- Canonical chain set
- A
- Partition
- train
MD-derived metadata
16.31 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 19.51 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: A
UUUUUUUUUUUUUAAAAUUUUUUUU
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| A | A | A | R |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
044cab43dae3eb67dcd13b5fe092967116a83d45967d39642a78e13c0ec4cf9e
rna.gro · SHA-256
06d585eeadae8f83d244a7a400c9c9a1936466c9e3355557626966ddbd50a2b7
rna.pdb · SHA-256
519a7a37d8b8f97a8fefa2497cba2a6ad0d222a80de1f737ddc4a51bd9f481bf