Sample identity
- Trajectory ID
- RDB000048__1GAX_1_B
- Source structure
- 1GAX_1_D
- Length
- 75 nt
- Canonical chain set
- B
- Partition
- train
MD-derived metadata
4.53 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 23.05 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: B
GGGCGGCUAGCUCAGCGGAAGAGCGCUCGCCUCACACGCGAGAGGUCGUAGGUUCAAGUCCUACGCCGCCCACCA
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | D |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
42b6974df7e29e5ae1c5badbb7c5b838c6a3604d2b2b0678e2bd248defef6bfc
rna.gro · SHA-256
5ac63a5b5d6bb05b6f2f159566b3296848fa5c35fd5532a590eb39d6bcc6e48e
rna.pdb · SHA-256
e5d70f22ebb373cfdfab126de4c12a96807c1db22d6f6801051ecff42ada6c7f