Sample identity
- Trajectory ID
- RDB000087__1KOG_1_C
- Source structure
- 1KOG_1_K
- Length
- 37 nt
- Canonical chain set
- C
- Partition
- train
MD-derived metadata
2.83 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 16.23 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: C
GGCGUAUGUGAUCUUUCGUGUGGGUCACCACUGCGCC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| C | C | C | K |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
602fc51210a3eb89d64cd2a881a3fc31221091a4b84fa789f213a986d0616641
rna.gro · SHA-256
b433892f29ef5acf2b5fe64a13cd42bbdd5e9bdcefdc0e02c68afc9915b4363f
rna.pdb · SHA-256
27ad66d51c162076aaecd682ba5c181c699ce586574cb21ea86dc3ddefcefef5