Sample identity
- Trajectory ID
- RDB000093__1L3D_1_A
- Source structure
- 1L3D_1_A
- Length
- 27 nt
- Canonical chain set
- A
- Partition
- test_struct
MD-derived metadata
1.63 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 12.00 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: A
GCGCGGCACCGUCCGCGGAACAAACGG
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| A | A | A | A |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
bdfbf9f3ad4d2f8268b948f4904c2c45c561c240f35628f53b5a93dd33194119
rna.gro · SHA-256
71c8237709842cfd5bfaa8b1d446f48349c30fc97a1a3b71a61d2dc684320359
rna.pdb · SHA-256
0baf6d45dcbe371e758d28b8cdc66a1c63b5917390ff47508e80ecf8c63bb9b3