Sample identity
- Trajectory ID
- RDB000187__1X9K_1_A-B-C-D
- Source structure
- 1X9K_1_D-C-A-B
- Length
- 62 nt
- Canonical chain set
- A-B-C-D
- Partition
- guard
MD-derived metadata
2.58 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 17.62 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: A → B → C → D
UCGCAGUCCUAUUAAUAGAGAAGCGAGGCAGAGAAACACACGAUCGUGGUACAUUACCUGCC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| A | A | A | A |
| B | B | B | B |
| C | C | C | C |
| D | D | D | D |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
3fdff71c3c9a0898ad0c9c7d96c5fd2aba6bc809aa57996e74ab87e475a3f5a0
rna.gro · SHA-256
58ac25a529673c4c61b2808011f85946646e8f76195b92d1ebf7dc50c6c1c417
rna.pdb · SHA-256
4dff7bd9f46ba5f1cbacda74424774eb6d2da0bd025533848274d5769cb3a312