Sample identity
- Trajectory ID
- RDB000200__1YKV_1_B-C-D
- Source structure
- 1YKV_1_D
- Length
- 87 nt
- Canonical chain set
- B-C-D
- Partition
- train
MD-derived metadata
9.80 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 22.31 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: B → C → D
GGGCGAGGCCGUGCCAGCUCUUCGGAGCAAUACUCGGCGGAGCUCGCCCGGGCGAGGCCGUGCCAGCUCUUCGGAGCAAUACUCGGC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | B |
| C | C | C | C |
| D | D | D | D |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
7feb2f5b55f48e7d7722bfde0b4670d045e683efab34134a13c583ef9ed0f28c
rna.gro · SHA-256
62a324207cfd83236b00831ccc72dd6a6895a162a0891f53f24fe0133a299b36
rna.pdb · SHA-256
d5c4c15de059164b480c37cbc3e3df04b0df798ab6ea97889f507b273fea1e79