Sample identity
- Trajectory ID
- RDB000201__1YTY_1_A-B
- Source structure
- 1YTY_1_C-D
- Length
- 18 nt
- Canonical chain set
- A-B
- Partition
- train
MD-derived metadata
7.09 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 11.97 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: A → B
UGCUGUUUUUGCUGUUUU
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| A | A | A | C |
| B | B | B | D |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
f692ddb5ea22deac0fcd5f534a9e5e75f369528ccf726af859bb34c22ac7e9bc
rna.gro · SHA-256
c293cfe17cccf497b63e7f85637d00fd6a30b692e015b874e1812d2b63acf21f
rna.pdb · SHA-256
f1dc2b65f051d2b54cd14d6ffae08a9830bb3cbff1f096b691e52f3cd2b69f4b