Sample identity
- Trajectory ID
- RDB000205__1YYO_1_A-B-C-D
- Source structure
- 1YYO_1_C-D
- Length
- 48 nt
- Canonical chain set
- A-B-C-D
- Partition
- train
MD-derived metadata
3.23 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 20.96 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: A → B → C → D
CGCGAAUUCGCGCGCGAAUUCGCGCGCGAAUUCGCGCGCGAAUUCGCG
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| A | A | A | C |
| B | B | B | D |
| C | C | C | E |
| D | D | D | F |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
78cae659535c382bfcdf3bf004b419b44164b458eb6f90aa7d89032c6618088c
rna.gro · SHA-256
aed38fcc060fa2dd2710b6af7c587dc8c4e4ec6094f29afb88033485d17dbeea
rna.pdb · SHA-256
c57b474e1af54d776e98abb0dec48eec099d9559802041be5856fec22c9ebc9e