Sample identity
- Trajectory ID
- RDB000207__1YYW_1_A-B-C-D
- Source structure
- 1YYW_1_E-F
- Length
- 48 nt
- Canonical chain set
- A-B-C-D
- Partition
- train
MD-derived metadata
2.84 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 20.59 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: A → B → C → D
AAAUAUAUAUUUAAAUAUAUAUUUAAAUAUAUAUUUAAAUAUAUAUUU
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| A | A | A | E |
| B | B | B | F |
| C | C | C | G |
| D | D | D | H |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
6e62f86cbdb348634591728781a44c3789bf6372e929559c3b4a1c4f463179d4
rna.gro · SHA-256
aae96e6234c462c5c0bce807e26adedd80045feb8df3c9911aee4b14c14e704e
rna.pdb · SHA-256
149a42fc230acef1560c720e76aeba8f4fb3199cc82a919b2ed1fb40368996cb