Sample identity
- Trajectory ID
- RDB000298__2E9Z_1_A-B
- Source structure
- 2E9Z_1_B-C
- Length
- 16 nt
- Canonical chain set
- A-B
- Partition
- train
MD-derived metadata
1.59 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 10.49 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: A → B
CAUGGGCCCGGGCCCA
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| A | A | A | B |
| B | B | B | C |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
42d314cc1189e7ce530246f805aeaecab76896a65d33927c275e552a12121816
rna.gro · SHA-256
283ff90049fa08a6212164d7faa9fec0bc94ca98011966d6f292842abb3f31f4
rna.pdb · SHA-256
736e5e6d37928d3fccd549fe29bec7b79bcb050aaff067073e158c889def439d