Sample identity
- Trajectory ID
- RDB000337__2NPZ_1_A-B-C-D
- Source structure
- 2NPZ_1_D-C-A-B
- Length
- 61 nt
- Canonical chain set
- A-B-C-D
- Partition
- test_struct
MD-derived metadata
2.42 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 17.84 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: A → B → C → D
UCCCAGUCCACCGCGGUGAGAAGGGGGCAGAGAAACACACGAUCGUGGUACAUUACCUGCC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| A | A | A | A |
| B | B | B | B |
| C | C | C | C |
| D | D | D | D |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
bfc1720d05b430b467342a7b0b7c302691a511afcd2be68fd583ba7e562708db
rna.gro · SHA-256
0fd666dc3fa8cff340e816f6406ffb1e9a4b09f709b0299724e812de11b97977
rna.pdb · SHA-256
8eea83bd64a1f4e10b11478e63daa9a0d00d1fad9825708e61f4cd15e41e2922