Sample identity
- Trajectory ID
- RDB000347__2O5J_1_B
- Source structure
- 2O5J_1_H
- Length
- 16 nt
- Canonical chain set
- B
- Partition
- train
MD-derived metadata
5.58 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 16.45 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: B
GAGUCUGCGGCGCGCG
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | H |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
238324ffbb381a5bedec0c6ced860a919fb4fff3779ec1913a8a75b76d97689f
rna.gro · SHA-256
3df22fddaadbbe70daea6b99518daf6a0bc4708191fd7a5a38deac37d7f67367
rna.pdb · SHA-256
d46426dff481e78ecf0c42190953ce2070c4ea31fa90574660fc3984fedbc8c8