Sample identity
- Trajectory ID
- RDB000495__3DIM_1_A
- Source structure
- 3DIM_1_A
- Length
- 173 nt
- Canonical chains
- A
- Partition
- train
MD-derived metadata
4.00 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 31.19 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
GGCCGACGGAGGCGCGCCCGAGAUGAGUAGGCUGUCCCAUCAGGGGAGGAAUCGGGGACGGCUGAAAGGCGAGGGCGCCGAAGGGUGCAGAGUUCCUCCCGCUCUGCAUGCCUGGGGGUAUGGGGAAUACCCAUACCACUGUCACGGAGGUCUCUCCGUGGAGAGCCGUCGGU
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| A | A | A | A |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
RNADynBench-v0.1-20261001
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Coming soon |
| rna.gro | Matching initial coordinates / topology | Coming soon |
| rna.pdb | Matching initial structure with PDB chain mapping | Coming soon |
rna.xtc · SHA-256
f26611b5628caa6d29fc5b54d87655f817ba3049c0dffc0cd43050969952c379
rna.gro · SHA-256
fb697175ae4ef473b8149a529c59d1a3fc10d0ffef3024b780770fb1ef39a923
rna.pdb · SHA-256
bd4f345ee39c5742a39c40362c652c0e2c321188a2a1a34410967d4e29677cc9