Sample identity
- Trajectory ID
- RDB000575__3JB7_1_D-E
- Source structure
- 3JB7_1_t-m
- Length
- 11 nt
- Canonical chains
- D, E
- Partition
- train
MD-derived metadata
1.70 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 8.91 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
GGGGGGCCCCC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| D | D | D | t |
| E | E | E | m |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
RNADynBench-v0.1-20261001
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Coming soon |
| rna.gro | Matching initial coordinates / topology | Coming soon |
| rna.pdb | Matching initial structure with PDB chain mapping | Coming soon |
rna.xtc · SHA-256
8ed0555c77328f165a204a772c7c85b99a6d0c23c1110ccd5968d8c2645ac298
rna.gro · SHA-256
4044e0eb0c3caf234f3e89fd3a26ebbc28f26555c527c148fe13e76b432146e2
rna.pdb · SHA-256
bd2080324f44400e1b32920998b3e7966e2a67ebf45a25ed4dafc9fe7e173a59