Sample identity
- Trajectory ID
- RDB000620__3NVK_1_I-J
- Source structure
- 3NVK_1_L-S
- Length
- 27 nt
- Canonical chain set
- I-J
- Partition
- train
MD-derived metadata
8.85 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 13.81 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: I → J
AGCUCUGACCGAAAGGCGUGAUGAGCU
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| I | I | I | L |
| J | J | J | S |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
28b76853391a19978002748c4ec7ec2fb324012db92728a78209d1ab05cca278
rna.gro · SHA-256
989e5b5a4ffd074c1f4b0668650f385769badcbcb96466d90475bb0aae9355bd
rna.pdb · SHA-256
629d7e6a4d992c18ad67365172c62730d8f7227e05898cc4009ed4919712388f