Sample identity
- Trajectory ID
- RDB000683__3SKR_1_B
- Source structure
- 3SKR_1_B
- Length
- 64 nt
- Canonical chains
- B
- Partition
- test_struct
MD-derived metadata
5.11 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 19.66 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
Manuscript denoising figure · 3SKR_AThe original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
GCUUAUACAGGGUAGCAUAAUGGGCUACUGACCCCGCCUUCAAACCUAUUUGGAGACUAUAAGU
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | B |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
RNADynBench-v0.1-20261001
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Coming soon |
| rna.gro | Matching initial coordinates / topology | Coming soon |
| rna.pdb | Matching initial structure with PDB chain mapping | Coming soon |
rna.xtc · SHA-256
04a0c8a9d2f662bb8648d86fa0e263a037a684c1931f8656a0f8fbb264a08f45
rna.gro · SHA-256
76beadb63f7d3015791253dca898f808332350467cf69107b5eca4eb9e032709
rna.pdb · SHA-256
b94285a601be8b755b8766993955175d95055fdf7a133836dad4fd1b809db9aa