Sample identity
- Trajectory ID
- RDB000709__3WBM_1_E-F
- Source structure
- 3WBM_1_X-Y
- Length
- 50 nt
- Canonical chain set
- E-F
- Partition
- train
MD-derived metadata
3.83 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 21.92 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: E → F
GGUAAGAGCACCCGACUGCUCUUCCGGUAAGAGCACCCGACUGCUCUUCC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| E | E | E | X |
| F | F | F | Y |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
7b350e4a70858f4069ac0bd519a204674d09ebe5db0dc6e588f08abb781e3e71
rna.gro · SHA-256
562e0f85b7b0681fae29d8fd54508cabb8575c3ed367d008e069703f74c902eb
rna.pdb · SHA-256
38845fcc0322cdf34a75e2099fea1981195d9822259fd04a02110866dcfe96dd