Sample identity
- Trajectory ID
- RDB000741__4B3M_1_V-W
- Source structure
- 4B3M_1_Z-W
- Length
- 22 nt
- Canonical chain set
- V-W
- Partition
- train
MD-derived metadata
1.92 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 12.96 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: V → W
UUCAAAGGGGAUUGAAAAUCCC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| V | V | V | W |
| W | W | W | Z |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
bea88aa781edef281049c1d5ee7d0adf1ba25ad2af94034bec1e6291b96f1db4
rna.gro · SHA-256
29668aef117c78cba8c2ddad0d140300ee0ebdfddc5e10ebb90484f136b09094
rna.pdb · SHA-256
b9456e6199faba5790719f69e83f5a244fefaf297bc29cf0482fd76df122bfb8