Sample identity
- Trajectory ID
- RDB000828__4K4Z_1_B-C-D
- Source structure
- 4K4Z_1_B-C-D
- Length
- 32 nt
- Canonical chain set
- B-C-D
- Partition
- train
MD-derived metadata
3.92 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 16.21 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: B → C → D
CCAGGUCUCUCGUCGAAGUUCGACGAGAGAGG
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | B |
| C | C | C | C |
| D | D | D | D |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
adb75a8bf2cde46cf8b3179d07a6f55d3c2b059be9f73b14e131ddfc351fbeeb
rna.gro · SHA-256
5776390e0270919e15da5371eb81ecd82cee2a34963b4f181c83a57d6fb9cfc4
rna.pdb · SHA-256
8c3efcf13c9781bec15df29b1f343fe12f27ac4cb4b8d1612ceb201d86e3c767