Sample identity
- Trajectory ID
- RDB000835__4KQ0_1_B-D
- Source structure
- 4KQ0_1_B-E
- Length
- 38 nt
- Canonical chain set
- B-D
- Partition
- train
MD-derived metadata
2.94 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 16.92 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: B → D
GGCGGCGGCGGCGGCGGCCGGCGGCGGCGGCGGCGGCC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | B |
| D | D | D | E |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
ca7591b7ac84b12c3232d318ccb1ea8828671bcf9de170c1b76a6a058ed51362
rna.gro · SHA-256
8b39531c3f955299a9209a8c24b211c898e7aaa8a9428be419e99a488f962767
rna.pdb · SHA-256
7b9f8e8fdbd1806bf599f67cd1b52a86c55ac499be8aead2d0cb925c790d0875