Sample identity
- Trajectory ID
- RDB000899__4PDB_1_B
- Source structure
- 4PDB_1_I
- Length
- 38 nt
- Canonical chains
- B
- Partition
- train
MD-derived metadata
4.55 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 16.77 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
GGGAUGCUCAGUGAUCCUUCGGGAUAUCAGGGCAUCCC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | I |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
RNADynBench-v0.1-20261001
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Coming soon |
| rna.gro | Matching initial coordinates / topology | Coming soon |
| rna.pdb | Matching initial structure with PDB chain mapping | Coming soon |
rna.xtc · SHA-256
4ac7f914095c38016948e81f6031065f7478e191ca295fc615d7f84fc59b6ddb
rna.gro · SHA-256
edc618b5a1894cb4a63b3b53039d6dba033b37879dcec27a0f82ce5217731ada
rna.pdb · SHA-256
405c3f2058205fcfbb66f5817ce8c92738edcc12f63c35d04b45a4c70015269f