Sample identity
- Trajectory ID
- RDB000900__4PDQ_1_A-B
- Source structure
- 4PDQ_1_A-B
- Length
- 46 nt
- Canonical chain set
- A-B
- Partition
- train
MD-derived metadata
3.66 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 20.29 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: A → B
UUGCGUCACGCCGGCGAAGUCGCUUGCGUCACGCCGGCGAAGUCGC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| A | A | A | A |
| B | B | B | B |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
112d8acfd93e3d6c4ce522d209eb4c8659d4616019e0d5589d275d7fa3fc2d0d
rna.gro · SHA-256
baea43846ae4369170d8dde527ceea6bf590bd1c1696ae1c6afa8a6b893e92ac
rna.pdb · SHA-256
449f6311b23d5f72bdf8ca80fd8ac1bbb6dca9eef5a0ea2e3e971f50ae4d64ee