Sample identity
- Trajectory ID
- RDB000909__4PUO_1_F
- Source structure
- 4PUO_1_E
- Length
- 19 nt
- Canonical chain set
- F
- Partition
- val
MD-derived metadata
7.65 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 18.24 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: F
CGGCGCCCGAACAGGGACU
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| F | F | F | E |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
bdb86958b58e0d69d9888ccf12d13383b32f520b7d7de32ad736808f958ecd5b
rna.gro · SHA-256
dab2a112576fc914501ff009e34d8c9ae830d1e9719e09a6ec95552781d3b1cf
rna.pdb · SHA-256
2e9092b5f62bfc4fd265f1375e3bb08df98e283cece590e7696d67378e65f5bb