Sample identity
- Trajectory ID
- RDB000941__4U38_1_A-B-C-D-E-F-G-H
- Source structure
- 4U38_1_E-F
- Length
- 56 nt
- Canonical chain set
- A-B-C-D-E-F-G-H
- Partition
- train
MD-derived metadata
2.39 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 18.37 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: A → B → C → D → E → F → G → H
UAGCUCCGGUGCUAUAGCUCCGGUGCUAUAGCUCCGGUGCUAUAGCUCCGGUGCUA
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| A | A | A | A |
| B | B | B | B |
| C | C | C | C |
| D | D | D | D |
| E | E | E | E |
| F | F | F | F |
| G | G | G | G |
| H | H | H | H |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
9f3433f2008164aa1679f7c5a0a682e8d64ff30da0e29c59f26b849f2a2e8af4
rna.gro · SHA-256
eb591343c23753bfe9672633e1579d2b9075f7e3d0f974d42606c0db580c1720
rna.pdb · SHA-256
68eb1feb9458337079eeb0e95adda918cd9cd22aeb18cbd68dc175ab83bb24d1