Sample identity
- Trajectory ID
- RDB001078__4YVJ_1_C
- Source structure
- 4YVJ_1_C
- Length
- 71 nt
- Canonical chain set
- C
- Partition
- train
MD-derived metadata
3.56 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 22.24 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: C
UGGGAGGUCGUCUAACGGUAGGACGGCGGACUCUUGAUCCGCUGGUGGAGGUUCGAGUCCUCCCCUCCCAG
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| C | C | C | C |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
7a18e1e7e62d0cf0f81b24054d3e224010d633c387e74e2eaffd2876f706b94e
rna.gro · SHA-256
54502ce2c3a14e683b657e3c12fda2bdd7f6664e73b5ff5a5fbb4280306ee90d
rna.pdb · SHA-256
3ebe9780fd20960369a5fc3ca7ddf47199d3c43f00bd0a88ce1e8f702146c4ce