Sample identity
- Trajectory ID
- RDB001098__5B43_1_B
- Source structure
- 5B43_1_B
- Length
- 40 nt
- Canonical chain set
- B
- Partition
- val
MD-derived metadata
14.02 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 29.77 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: B
AAUUUCUACUCUUGUAGAUGGAAAUUAGGUGCGCUUGGCA
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | B |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: geometry:rg_spike
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
0c9f0e6345838bf6ec256c0b8a2d7bfa9e86accbb46e0c70df11b4e197a21909
rna.gro · SHA-256
57ef3a1d4cf57dbc707b4d8b3a55d242b0827a7f1bece7cd3de804f6b273ae57
rna.pdb · SHA-256
ca10b43192c8bdaa3d7cccba218d14d663f99c60fd1d4878e8a27435d9eb1ad7