Sample identity
- Trajectory ID
- RDB001110__5BKN_1_P-W
- Source structure
- 5BKN_1_e
- Length
- 18 nt
- Canonical chain set
- P-W
- Partition
- train
MD-derived metadata
6.77 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 12.23 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: P → W
AAAAAAAUUUUUUUUUUU
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| P | P | P | P |
| W | W | W | e |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
0f50df3a069843a00a84c93fcfc2bd5574100958045065e08c38cf4d0a21f8c0
rna.gro · SHA-256
eac08dcfd341720f40373c33ef1b4b998f2ea73beef3e14d6b0800e4f95a838b
rna.pdb · SHA-256
4cff3ed2fb0fd05243d6826edd35aa4fa948f0303db07e8a67ae031c19a4e567