Sample identity
- Trajectory ID
- RDB001157__5FJ1_1_D
- Source structure
- 5FJ1_1_D
- Length
- 24 nt
- Canonical chain set
- D
- Partition
- val
MD-derived metadata
1.23 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 13.21 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: D
UGGGGAGCCGAAAGGCGAAGAACC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| D | D | D | D |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
24bef292c161de870d435003a606095467c9a91733b83c3677ad3f39d271e5f3
rna.gro · SHA-256
f975b2144a655cea130aa6215d84f97370d279e3592ffc389575296f4199d0ea
rna.pdb · SHA-256
709c00f0af0f312bba141b84dd4a539e87a4ca60f9c76cffe4ee0afe26d5288c