Sample identity
- Trajectory ID
- RDB001201__5JCH_1_B-C
- Source structure
- 5JCH_1_X-Y
- Length
- 20 nt
- Canonical chain set
- B-C
- Partition
- train
MD-derived metadata
1.33 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 11.61 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: B → C
GGUACGUACCGGUACGUACC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | X |
| C | C | C | Y |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
4ab2440b1d433be15902bcfb2621faaec94c4a205664fde5b6a71eccbbbfe259
rna.gro · SHA-256
d07b43085c466e8275598a0d54345e6bdfdf3da78d5b99546f6a43e79e4f24d5
rna.pdb · SHA-256
55b0f3b972cd357ed1e087018ea907e7025bae4f66aae16c32ddf269600605ef