Sample identity
- Trajectory ID
- RDB001217__5L2L_1_D-H
- Source structure
- 5L2L_1_D
- Length
- 21 nt
- Canonical chain set
- D-H
- Partition
- test_flex
MD-derived metadata
10.31 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 15.80 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: D → H
AAAAAAAAAAGAAAAAAAAAG
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| D | D | D | D |
| H | H | H | H |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
960ecdd98db1e78904297a8120a48034ac943ce814833374238b82a8c6f4eca8
rna.gro · SHA-256
f333caf87e154c0fbf77cc6ee03b0bcea32cb9eb7f31ccfd8383b1a919d3d826
rna.pdb · SHA-256
727ae281f34850a61c9209e6decbd06536f9b60066c9c9bbc67b70bf77251521