Sample identity
- Trajectory ID
- RDB001241__5MSF_1_A
- Source structure
- 5MSF_1_R
- Length
- 18 nt
- Canonical chains
- A
- Partition
- train
MD-derived metadata
3.10 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 11.28 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
CCGGAGGAUCACCACGGG
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| A | A | A | R |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
RNADynBench-v0.1-20261001
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Coming soon |
| rna.gro | Matching initial coordinates / topology | Coming soon |
| rna.pdb | Matching initial structure with PDB chain mapping | Coming soon |
rna.xtc · SHA-256
fd58c81f2275caa3bdce8afcd1d7c88181e79ab4e6a3e7aa195d3edbda5f5951
rna.gro · SHA-256
09aadf1ed453239661de15477a3c34005c13d4dda5b4b8700cb3e8ef2d18e00c
rna.pdb · SHA-256
3abcaebf6cbb9617620a0d6dcb23e5171033c69e71e49223e5dda363ffc47eb1