Sample identity
- Trajectory ID
- RDB001245__5ND9_1_X
- Source structure
- 5ND9_1_B
- Length
- 114 nt
- Canonical chain set
- X
- Partition
- train
MD-derived metadata
7.36 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 32.26 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: X
UCUGGUGACUAUAGCAAGGAGGUCACACCUGUUCCCAUGCCGAACACAGAAGUUAAGGUCUUUAGCGACGAUGGUAGCCAACUUACGUUCCGCUAGAGUAGAACGUUGCCAGGC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| X | X | X | B |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
9c3ae6a5ac5bdec3d905904641c9bfcbe4b4bf15933e4d5026d76a2a83204bf5
rna.gro · SHA-256
e640584cb87f58ed9772053c0823e231e5d18bc12a297cba6add9744e106bf8d
rna.pdb · SHA-256
9fa88a6f2d9b63c57e06e7fb7d401ae9fe637a50cb9b9bb28125ae2065180e73