Sample identity
- Trajectory ID
- RDB001253__5O9Z_1_DB
- Source structure
- 5O9Z_1_5
- Length
- 114 nt
- Canonical chain set
- DB
- Partition
- val
MD-derived metadata
18.89 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 42.06 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: DB
ACUCUGGUUUCUCUUCAGAUCGCAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAACAACUCUGAGUCUUAACCCAAUUUUUUGAGCCUUGCCUUGGCAAGGCUA
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| DB | A | DB | 5 |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
f49233a31bbf586296a8016ca24f4113dc41b281d42956753bfc3e241ed16033
rna.gro · SHA-256
b9d6ce12c4473c7b72483b8d24ac8b0972c8c27557ca9aafcc2021bc19a7ba47
rna.pdb · SHA-256
f51fbd928bf7b26378bce0135080b472e3da8a58ea6464eee50bb8411f1b8f4c