Sample identity
- Trajectory ID
- RDB001270__5UD5_1_C
- Source structure
- 5UD5_1_C
- Length
- 70 nt
- Canonical chain set
- C
- Partition
- train
MD-derived metadata
3.70 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 23.07 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: C
GGAAACCUGAUCAUGUAGAUCGAAUGGACUCUAAAUCCGUUCAGCCGGGUUAGAUUCCCGGGGUUUCCGC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| C | C | C | C |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
4c0fda7c57993a51e475ee2d322e95cb778e07fe7449f9618dad67f5e87ddf2a
rna.gro · SHA-256
75125ecef306c3e58746005694b5f2422cb6d99d572dfd8a23d1b753e5a70afb
rna.pdb · SHA-256
fd39f7591799cb3065181c17e9df54ee18e3994b7ba1507a7e730836a5172b7a