Sample identity
- Trajectory ID
- RDB001274__5UKB_1_K
- Source structure
- 5UKB_1_R
- Length
- 45 nt
- Canonical chain set
- K
- Partition
- train
MD-derived metadata
18.36 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 28.76 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: K
UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| K | K | K | R |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: geometry:rmsd_high
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
4ffad7c03e215e2d0ca187813a5d00e8fc305208a42bc4e81b63a51ffcd519ba
rna.gro · SHA-256
2a009fb47337686962df9ddf66982e79d7b477a42151b0df5ecde0abd86fed00
rna.pdb · SHA-256
8d132594e6e1bcd4cb7a749dd6ab4d66024514e5ce44aa9fb830cb6e5e5f815e