Sample identity
- Trajectory ID
- RDB001282__5V3I_1_A
- Source structure
- 5V3I_1_A
- Length
- 186 nt
- Canonical chain set
- A
- Partition
- test_flex
MD-derived metadata
9.36 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 37.48 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: A
GGCGCUGUGUCGCAAUCUGCGAAGGGCGUCGUCGCCCCAAGCGGUAGUAAGCAGGGAACUCACCUCCAAUGAAACACAUUGUCGUAGCAGUUGACUACUGUUAUGUGAUUGGUAGAGGCUAAGUGACGGUAUUGGCGUAAGCCAAUACCGCAGCACAGCACAAGCCCGCUUGCGAGAUUACAGCGC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| A | A | A | A |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
7291b964bf1693978838e7ef928db619806a128e35a07693e51e75d7f03196fb
rna.gro · SHA-256
afde6c833d9126126d22c632cdca9be54a032b14d7cf5533a368a6f0a5e663f5
rna.pdb · SHA-256
d47343b4d0709cfa77870aa621e0a5e5e7fd0cf33c5843fcb8cd2e352d0a8e4e