Sample identity
- Trajectory ID
- RDB001291__5VGW_1_A-B
- Source structure
- 5VGW_1_A-B
- Length
- 35 nt
- Canonical chain set
- A-B
- Partition
- train
MD-derived metadata
1.87 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 17.49 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: A → B
CUGCUGGCUAAGGCCCGAAAGGGCUAUGCCUGCUG
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| A | A | A | A |
| B | B | B | B |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
62a209a9892666b2c28024553c40ae5e64a59c9b6c8a2f39327532d52ffff29c
rna.gro · SHA-256
d8031a45ac2048e64c05fb3a631b31767ee42d64249331701b057fc770581d81
rna.pdb · SHA-256
b96da8f110c85b00ec70db90f7b962120da87fde03dee61b385caec21c00d326