Sample identity
- Trajectory ID
- RDB001297__5VJB_1_C-D
- Source structure
- 5VJB_1_C
- Length
- 32 nt
- Canonical chain set
- C-D
- Partition
- val
MD-derived metadata
1.23 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 15.37 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: C → D
GCGGGGACGACCCUGCGCGGGGACGACCCUGC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| C | C | C | C |
| D | D | D | D |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
ef12b28f568aaf48928289e22cbd0bd144fa4fd97e13a7048e2c30aef8f7dd4b
rna.gro · SHA-256
5f1abab5617b7bbb6b935eeb8473a5fd1d2ab4c69690f92d6899c54431cb7606
rna.pdb · SHA-256
46ca3020d11684575eea22f9105c0cac3145125d7b31e0ef37ac2ae813201cbd