Sample identity
- Trajectory ID
- RDB001321__5XUS_1_B
- Source structure
- 5XUS_1_B
- Length
- 40 nt
- Canonical chains
- B
- Partition
- val
MD-derived metadata
14.13 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 26.83 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
AAUUUCUACUAAGUGUAGAUGGAAAUUAGGUGCGCUUGGC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | B |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: geometry:rg_spike
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
RNADynBench-v0.1-20261001
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Coming soon |
| rna.gro | Matching initial coordinates / topology | Coming soon |
| rna.pdb | Matching initial structure with PDB chain mapping | Coming soon |
rna.xtc · SHA-256
54025fb0bd0a823cbad7263dc67354d245111934806c44183434dce68d8cd667
rna.gro · SHA-256
a39fea69464cb440e7394305c6fdeac6313b2d182469234d1a72f156a432f121
rna.pdb · SHA-256
56a24f0586467e13ee754e458b3615fbfa52c258d83ccae5ac6fd60a34b7cb80