Sample identity
- Trajectory ID
- RDB001411__6D8L_1_A-B
- Source structure
- 6D8L_1_A
- Length
- 316 nt
- Canonical chains
- A, B
- Partition
- test_struct
MD-derived metadata
5.51 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 36.85 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
GAAUUGCGGGAAAGGGGUCAACAGCCGUACAGUACCAAGUCUCAGGGGAAACUUUGAGAUGGCCUUGCAAAGGGUAUGGUAAUAAGCUGACGGACAUGGUCCUAACCACGCAGCCAAGUCCUAAGUCAACAGAUCUUCUGUUGAUAUGGAUGCAGUUCGAAUUGCGGGAAAGGGGUCAACAGCCGUACAGUACCAAGUCUCAGGGGAAACUUUGAGAUGGCCUUGCAAAGGGUAUGGUAAUAAGCUGACGGACAUGGUCCUAACCACGCAGCCAAGUCCUAAGUCAACAGAUCUUCUGUUGAUAUGGAUGCAGUUC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| A | A | A | A |
| B | B | B | B |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
RNADynBench-v0.1-20261001
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Coming soon |
| rna.gro | Matching initial coordinates / topology | Coming soon |
| rna.pdb | Matching initial structure with PDB chain mapping | Coming soon |
rna.xtc · SHA-256
ac9622f73190f7b563bb5dac1767f642b6f87c14eb98cfc5a01349a5c6a55aff
rna.gro · SHA-256
debfa77563292da088f41d4e91c9ee7ba8978b33b4929fb1686f12565405f4f8
rna.pdb · SHA-256
7ec46e6b582e58dfdc6268619006b7e2809c932f4f3d5548b386e244e0c60c0f