Sample identity
- Trajectory ID
- RDB001517__6I7O_1_LD
- Source structure
- 6I7O_1_YS
- Length
- 157 nt
- Canonical chain set
- LD
- Partition
- train
MD-derived metadata
18.56 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 42.03 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: LD
AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCCUUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUU
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| LD | A | LD | YS |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: geometry:rmsd_high
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
520d8dcade8a24846654c3664dae8f54236c90d25f70ac49d026eb7b86770255
rna.gro · SHA-256
fce2becdcb77f419c752fdd31a6ca52e68f3988a158a38b14451eafee2cc1880
rna.pdb · SHA-256
c22f10951dbdf94717aaa64d24dd754cb14285af070bceba5648a7430d3ade64