Sample identity
- Trajectory ID
- RDB001656__6PIF_1_K
- Source structure
- 6PIF_1_1
- Length
- 60 nt
- Canonical chain set
- K
- Partition
- train
MD-derived metadata
22.89 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 43.90 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: K
CUGAUAACUUACAGGACGCUUUGGCUUCAUUGCUUUUCAGGUGAACUGCCGAGUAGGUAG
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| K | K | K | 1 |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: geometry:rmsd_high
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
05909a9fc43b522220dcc981271e5a52c5bbe368da455b9c2c8e96d69f3fdabc
rna.gro · SHA-256
5546cad4ca7f76d212fa237bda6dffb87018c58caf509ca894350140840d6ded
rna.pdb · SHA-256
8c0e6dd458e98ad4d13522bfcb806c4600234f4043f63dbb97b3531fb9b17dd6