Sample identity
- Trajectory ID
- RDB001696__6SIC_1_GA
- Source structure
- 6SIC_1_V
- Length
- 48 nt
- Canonical chains
- GA
- Partition
- train
MD-derived metadata
20.72 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 40.31 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
AUUGAAAGUUCAAAGCUUAGAUACCCUGGAGGGAAACCAGACUUAACA
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| GA | A | GA | V |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: geometry:rmsd_high
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
RNADynBench-v0.1-20261001
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Coming soon |
| rna.gro | Matching initial coordinates / topology | Coming soon |
| rna.pdb | Matching initial structure with PDB chain mapping | Coming soon |
rna.xtc · SHA-256
b7ad8580bfc17a8defa12b783f6f8351e11749e5594333eddec80e451095b0ad
rna.gro · SHA-256
56f8cc11bb221ad0941e0b96fe37744dc1cb9ee7f162604b53e1a8c01be25d44
rna.pdb · SHA-256
a55229152260b16dc68ebb8eb4de3e8edc0fa473b80c990cfa294eab4e23ed03