Sample identity
- Trajectory ID
- RDB001714__6SZV_1_D-E-F
- Source structure
- 6SZV_1_R-M
- Length
- 41 nt
- Canonical chain set
- D-E-F
- Partition
- train
MD-derived metadata
17.82 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 18.90 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: D → E → F
AGUAGUAACAAGAGUAUACCUCUGCUUCUGCUAAGCAGAGG
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| D | D | D | V |
| E | E | E | R |
| F | F | F | M |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
ca7d664b242ceca6b28725401352cfa97d03c865e2277b19544ceb624ce4c0a5
rna.gro · SHA-256
eecc5a7385320b2f32e63c3f3aaf41e76432e8354e38336980df2c5287fa021e
rna.pdb · SHA-256
66ace417066923787f9a85f567de7b7a2c80bbbbbf5b4a1e970692977b06d05a