Sample identity
- Trajectory ID
- RDB002095__7OJK_1_B-C
- Source structure
- 7OJK_1_D-E
- Length
- 21 nt
- Canonical chain set
- B-C
- Partition
- train
MD-derived metadata
3.04 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 12.67 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: B → C
GCCUAGGAUGGGAUCCUAGGC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | E |
| C | C | C | D |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
a2a2447d92750622bef13864dd4f35e5f128c90ecb683a3b8108d5ad49bfa0e9
rna.gro · SHA-256
699a8cd0c87dcd1efeaf4f713853d94c7eed72d470f92ec1fed97619b0077bcc
rna.pdb · SHA-256
f87e4e82d8cafc1f18a20a82ab328812c05daf3884c0838ad487e1a9319b2dfb