Sample identity
- Trajectory ID
- RDB002117__7ORK_1_B-C
- Source structure
- 7ORK_1_H-T
- Length
- 35 nt
- Canonical chain set
- B-C
- Partition
- train
MD-derived metadata
8.62 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 18.67 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: B → C
ACGAGUGUCGUACCAAGACUUGGUAGUACACUACU
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | H |
| C | C | C | T |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
de1adf44d410f0816836f652a832d8e77743c41827ef2427ef8247620275f54d
rna.gro · SHA-256
581e57f8123c60b8ad11d97dea183e0d7a8759b541f29f04c1972a136be61f15
rna.pdb · SHA-256
2cfde46be53f259874f9a234f3d3052c45654b7162b66f5e3aebeae6b8049f4e