Sample identity
- Trajectory ID
- RDB002300__7XD9_1_E-F
- Source structure
- 7XD9_1_E-F
- Length
- 22 nt
- Canonical chain set
- E-F
- Partition
- train
MD-derived metadata
4.35 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 13.31 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: E → F
AACGAUUAUAUCCGGAUAUAAU
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| E | E | E | E |
| F | F | F | F |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
1ef05d69de2afaa2ccc92cad6e3c5d0c30d09b88eaddeda4e1b426fd5409a16c
rna.gro · SHA-256
70190487dfe2fca6d8e850da46d335a9bfa6ced8f6ead5ffb12d26d152a7a071
rna.pdb · SHA-256
587b0a4d637d13453206368b4cd19c23685fb0ea3822092f71ecf9b59465a2e3