Sample identity
- Trajectory ID
- RDB002349__7YND_1_B
- Source structure
- 7YND_1_B
- Length
- 38 nt
- Canonical chains
- B
- Partition
- train
MD-derived metadata
17.56 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 32.48 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
UUGAUGUCACGGAACAGGAACUUGAACAACAUCGUUAC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | B |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: geometry:rmsd_high
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
RNADynBench-v0.1-20261001
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Coming soon |
| rna.gro | Matching initial coordinates / topology | Coming soon |
| rna.pdb | Matching initial structure with PDB chain mapping | Coming soon |
rna.xtc · SHA-256
99ebdcd1ded8d2ab70530d2058fc65af02ad746d0057b6a9141233fa75a2d060
rna.gro · SHA-256
698bd8b7f2bea43bed6022abe3f7b29636c1559761a2968848af32f78166702e
rna.pdb · SHA-256
eddcda77047a5b04fb3cffe322899918fadc1eb4e363a63bc72e1d5a2fe5bb00