Sample identity
- Trajectory ID
- RDB002353__7YR6_1_E
- Source structure
- 7YR6_1_A
- Length
- 118 nt
- Canonical chains
- E
- Partition
- train
MD-derived metadata
15.46 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 36.31 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
GCGUACAGGGAACACGCAACCCCGAAGGAUCGGGGAAGGGACGUCGCCAGGGAGGCGAUUCCAUCAGGAUGAUGACGAGGGACUGAAGAGUGGGCGGGGUAAUACCCCGCCCCUUUUU
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| E | E | E | A |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: geometry:rg_spike;geometry:rmsd_high
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
RNADynBench-v0.1-20261001
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Coming soon |
| rna.gro | Matching initial coordinates / topology | Coming soon |
| rna.pdb | Matching initial structure with PDB chain mapping | Coming soon |
rna.xtc · SHA-256
67e096c7069f827f4f0e97f49eb74fe58164d675e0b1816d559684c1d4d7f973
rna.gro · SHA-256
6c1b23e0c84ecaa1ad4b53abe39efc8873662eb8d26cb941450bcba42b53bed3
rna.pdb · SHA-256
75f63444e47205e014cd011b107862f9e78d76a836bc7ddd6d858274dcc70808