Sample identity
- Trajectory ID
- RDB002420__8C4V_1_B-C
- Source structure
- 8C4V_1_H-V
- Length
- 28 nt
- Canonical chain set
- B-C
- Partition
- train
MD-derived metadata
5.55 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 16.95 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: B → C
AGGAGUAUCCACCGCAAGAUUUUGCGGA
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | H |
| C | C | C | V |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
f9dc37986bdd294f1e2cf7e90e193135086c79d7aa3d0c68bcfa63f4d70c3389
rna.gro · SHA-256
84d82c1177e657ee4d8b39439fcf45b374d83bae0f0ad5c133544e949e64cdb8
rna.pdb · SHA-256
c88b1fc7504e0ce8fcf9b73237d54f7413d29192b26e261d9ccbaeb4e71f55a2